There are two options here. After downloading the waypoint data into a .Dgm file, you may either
Use File: Save As... to save the coordinates and node numbers to a text file. Be sure to change Save As Type to Coordinates File. Or,
Use the CopyFromDgmFile utility to copy the coordinates from the .Dgm file to any other .Dgm file
Either way, you'll need to ensure that each intersection has a unique and nonzero ID. Both methods transfer all coordinates for all nodes; they use the intersection ID to assign the coordinates to the appropriate node.
The next version of TS/PP-Draft will offer more options and several improvements for collecting and assigning coordinates to intersections.
Regards.
Greg